The genus <i>Batzella</i>: a chemosystematic problem

Biogenetically unrelated cyclic guanidine alkaloids and pyrroloquinoline alkaloids have been reported from sponges assigned to the genus Batzella. These sponges have been assigned to this genus because of their possession of a simple complement of thin strongyles in irregular plumoreticulate arrangement. Cyclic guanidine alkaloids were first reported from an alleged axinellid species from the Caribbean, Ptilocaulis aff. P. spiculifer, and subsequently from a second Carribean specimen identified as Ptilocaulis spiculifer and at the same time from a Red Sea poecilosclerid, Hemimycale sp. Closely related compounds were described from a Caribbean specimen identified as Batzella sp. and also from the poecilosclerids Crambe crambe (Mediterranean) and Monanchora arbuscula (Brazil). Isobatzellins (pyrroloquinoline alkaloids) were reported from a black deep-water species from the Bahamas identified as Batzella sp. Chemically related pyrroloquinoline alkaloids were found in Pacific representatives of the fistular poecilosclerid genus Zyzzya, the hadromerid genus Latrunculia and the ?haplosclerid genus Prianos. Most of the voucher specimens involved in this puzzle were re-examined and several conclusions can be drawn: when inspected closely it appears, that the cyclic guanidine alkaloids are produced by sponges containing anisostrongyles, often in two categories, a thicker and a thinner one. Monanchora arbuscula, which has been recently discovered to produce these compounds, has monactinal spicules differentiated into a thinner subtylostyle and a thicker (tylo-) style, but many specimens have anisostrongylote modifications. Microscleres in Monanchora can be absent or very rare. By association, all the sponges from which cyclic guanidine alkaloids are known may be united in one family, possibly in a single wider defined genus Monanchora. However, further relationships with Crambe need to be studied. Both have cyclic guanidine alkaloids, both have megascleres of very variable shapes and thickness, differentiated mostly into two overlapping categories, microscleres and other additional spicules are often rare or absent. Relationships with the type of Hemimycale, viz. H. columella remain obscure, but in view of the much larger spicules of that species and the intricate ectosomal specialization (lacking in the above mentioned specimens) it is possible that similarities between the Red Sea Hemimycale and the European species are the product of parallel evolution. The strongyles of sponges producing pyrroloquinoline alkaloids are perfect isostrongyles and in the ectosome these are arranged in a definite ectosomal tangential crust. A good proportion of these strongyles have a faint spination on the apices. Assignment of these sponges to Batzella rest on the properties of its type species Batzella inops. Examination of a type spicule slide of that species did not solve that question, but until further notice Batzella may be used for the deep-water material. A further unsolved problem that remains is the phylogenetic relationships of Batzella with Zyzzya and Latrunculia. The likelyhoods of possible causes for this distribution of compounds are discussed

Regulation, sensory domains and roles of two Desulfovibrio desulfuricans ATCC27774 Crp family transcription factors, HcpR1 and HcpR2, in response to nitrosative stress

In silico analyses identified a Crp/Fnr family transcription factor (HcpR) in sulfate-reducing bacteria that controls expression of the hcp gene, which encodes the hybrid cluster protein and contributes to nitrosative stress responses. There is only one hcpR gene in the model sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough, but two copies in D. desulfuricans 27774, which can use nitrate as an alternative electron acceptor to sulfate. Structures of the D. desulfuricans hcpR1, hcpR2 and hcp operons are reported. We present evidence that hcp expression is regulated by HcpR2, not by HcpR1, and that these two regulators differ in both their DNA-binding site specificity and their sensory domains. HcpR1 is predicted to be a b-type cytochrome. HcpR1 binds upstream of the hcpR1 operon and its synthesis is regulated coordinately with hcp in response to NO. In contrast, hcpR2 expression was not induced by nitrate, nitrite or NO. HcpR2 is an iron-sulfur protein that reacts with NO and O2 . We propose that HcpR1 and HcpR2 use different sensory mechanisms to regulate subsets of genes required for defense against NO-induced nitrosative stress, and that diversification of signal perception and DNA recognition by these two proteins is a product of D. desulfuricans adaptation to its particular environmental niche. This article is protected by copyright. All rights reserved

The Magnetic Field of the Solar Corona from Pulsar Observations

We present a novel experiment with the capacity to independently measure both the electron density and the magnetic field of the solar corona. We achieve this through measurement of the excess Faraday rotation due to propagation of the polarised emission from a number of pulsars through the magnetic field of the solar corona. This method yields independent measures of the integrated electron density, via dispersion of the pulsed signal and the magnetic field, via the amount of Faraday rotation. In principle this allows the determination of the integrated magnetic field through the solar corona along many lines of sight without any assumptions regarding the electron density distribution. We present a detection of an increase in the rotation measure of the pulsar J1801$-$2304 of approximately 160 \rad at an elongation of 0.95$^\circ$ from the centre of the solar disk. This corresponds to a lower limit of the magnetic field strength along this line of sight of $> 393\mu\mathrm{G}$. The lack of precision in the integrated electron density measurement restricts this result to a limit, but application of coronal plasma models can further constrain this to approximately 20mG, along a path passing 2.5 solar radii from the solar limb. Which is consistent with predictions obtained using extensions to the Source Surface models published by Wilcox Solar ObservatoryComment: 16 pages, 4 figures (1 colour): Submitted to Solar Physic

Probing the dark matter issue in f(R)-gravity via gravitational lensing

For a general class of analytic f(R)-gravity theories, we discuss the weak field limit in view of gravitational lensing. Though an additional Yukawa term in the gravitational potential modifies dynamics with respect to the standard Newtonian limit of General Relativity, the motion of massless particles results unaffected thanks to suitable cancellations in the post-Newtonian limit. Thus, all the lensing observables are equal to the ones known from General Relativity. Since f(R)-gravity is claimed, among other things, to be a possible solution to overcome for the need of dark matter in virialized systems, we discuss the impact of our results on the dynamical and gravitational lensing analyses. In this framework, dynamics could, in principle, be able to reproduce the astrophysical observations without recurring to dark matter, but in the case of gravitational lensing we find that dark matter is an unavoidable ingredient. Another important implication is that gravitational lensing, in the post-Newtonian limit, is not able to constrain these extended theories, since their predictions do not differ from General Relativity.Comment: 7 pages, accepted for publication in EPJ

N-body simulations of gravitational dynamics

We describe the astrophysical and numerical basis of N-body simulations, both of collisional stellar systems (dense star clusters and galactic centres) and collisionless stellar dynamics (galaxies and large-scale structure). We explain and discuss the state-of-the-art algorithms used for these quite different regimes, attempt to give a fair critique, and point out possible directions of future improvement and development. We briefly touch upon the history of N-body simulations and their most important results.Comment: invited review (28 pages), to appear in European Physics Journal Plu

Magnetic Field Generation in Stars

Enormous progress has been made on observing stellar magnetism in stars from the main sequence through to compact objects. Recent data have thrown into sharper relief the vexed question of the origin of stellar magnetic fields, which remains one of the main unanswered questions in astrophysics. In this chapter we review recent work in this area of research. In particular, we look at the fossil field hypothesis which links magnetism in compact stars to magnetism in main sequence and pre-main sequence stars and we consider why its feasibility has now been questioned particularly in the context of highly magnetic white dwarfs. We also review the fossil versus dynamo debate in the context of neutron stars and the roles played by key physical processes such as buoyancy, helicity, and superfluid turbulence,in the generation and stability of neutron star fields. Independent information on the internal magnetic field of neutron stars will come from future gravitational wave detections. Thus we maybe at the dawn of a new era of exciting discoveries in compact star magnetism driven by the opening of a new, non-electromagnetic observational window. We also review recent advances in the theory and computation of magnetohydrodynamic turbulence as it applies to stellar magnetism and dynamo theory. These advances offer insight into the action of stellar dynamos as well as processes whichcontrol the diffusive magnetic flux transport in stars.Comment: 41 pages, 7 figures. Invited review chapter on on magnetic field generation in stars to appear in Space Science Reviews, Springe

Horizontal Branch Stars: The Interplay between Observations and Theory, and Insights into the Formation of the Galaxy

We review HB stars in a broad astrophysical context, including both variable and non-variable stars. A reassessment of the Oosterhoff dichotomy is presented, which provides unprecedented detail regarding its origin and systematics. We show that the Oosterhoff dichotomy and the distribution of globular clusters (GCs) in the HB morphology-metallicity plane both exclude, with high statistical significance, the possibility that the Galactic halo may have formed from the accretion of dwarf galaxies resembling present-day Milky Way satellites such as Fornax, Sagittarius, and the LMC. A rediscussion of the second-parameter problem is presented. A technique is proposed to estimate the HB types of extragalactic GCs on the basis of integrated far-UV photometry. The relationship between the absolute V magnitude of the HB at the RR Lyrae level and metallicity, as obtained on the basis of trigonometric parallax measurements for the star RR Lyrae, is also revisited, giving a distance modulus to the LMC of (m-M)_0 = 18.44+/-0.11. RR Lyrae period change rates are studied. Finally, the conductive opacities used in evolutionary calculations of low-mass stars are investigated. [ABRIDGED]Comment: 56 pages, 22 figures. Invited review, to appear in Astrophysics and Space Scienc

High-time Resolution Astrophysics and Pulsars

The discovery of pulsars in 1968 heralded an era where the temporal characteristics of detectors had to be reassessed. Up to this point detector integration times would normally be measured in minutes rather seconds and definitely not on sub-second time scales. At the start of the 21st century pulsar observations are still pushing the limits of detector telescope capabilities. Flux variations on times scales less than 1 nsec have been observed during giant radio pulses. Pulsar studies over the next 10 to 20 years will require instruments with time resolutions down to microseconds and below, high-quantum quantum efficiency, reasonable energy resolution and sensitive to circular and linear polarisation of stochastic signals. This chapter is review of temporally resolved optical observations of pulsars. It concludes with estimates of the observability of pulsars with both existing telescopes and into the ELT era.Comment: Review; 21 pages, 5 figures, 86 references. Book chapter to appear in: D.Phelan, O.Ryan & A.Shearer, eds.: High Time Resolution Astrophysics (Astrophysics and Space Science Library, Springer, 2007). The original publication will be available at http://www.springerlink.co

Petrophysical, Geochemical, and Hydrological Evidence for Extensive Fracture-Mediated Fluid and Heat Transport in the Alpine Fault's Hanging-Wall Damage Zone

Fault rock assemblages reflect interaction between deformation, stress, temperature, fluid, and chemical regimes on distinct spatial and temporal scales at various positions in the crust. Here we interpret measurements made in the hanging-wall of the Alpine Fault during the second stage of the Deep Fault Drilling Project (DFDP-2). We present observational evidence for extensive fracturing and high hanging-wall hydraulic conductivity (∼10−9 to 10−7 m/s, corresponding to permeability of ∼10−16 to 10−14 m2) extending several hundred meters from the fault's principal slip zone. Mud losses, gas chemistry anomalies, and petrophysical data indicate that a subset of fractures intersected by the borehole are capable of transmitting fluid volumes of several cubic meters on time scales of hours. DFDP-2 observations and other data suggest that this hydrogeologically active portion of the fault zone in the hanging-wall is several kilometers wide in the uppermost crust. This finding is consistent with numerical models of earthquake rupture and off-fault damage. We conclude that the mechanically and hydrogeologically active part of the Alpine Fault is a more dynamic and extensive feature than commonly described in models based on exhumed faults. We propose that the hydrogeologically active damage zone of the Alpine Fault and other large active faults in areas of high topographic relief can be subdivided into an inner zone in which damage is controlled principally by earthquake rupture processes and an outer zone in which damage reflects coseismic shaking, strain accumulation and release on interseismic timescales, and inherited fracturing related to exhumation